Index

B

binarize_annotations() (in module blacksheep) (in module blacksheep.parsers) blacksheep (module) blacksheep.catheat (module) blacksheep.classes (module)

blacksheep.cli (module) blacksheep.comparisons (module) blacksheep.deva (module) blacksheep.parsers (module) blacksheep.visualization (module)

C

compare_groups_outliers() (in module blacksheep) (in module blacksheep.deva)

D

deva() (in module blacksheep) (in module blacksheep.deva)

G

get_sample_lists() (in module blacksheep.comparisons)

H

heatmap() (in module blacksheep.catheat)

L

list_to_file() (in module blacksheep.classes)

M

make_frac_table() (in module blacksheep.classes) make_outliers_table() (in module blacksheep) (in module blacksheep.deva)

make_signed_logqs() (blacksheep.classes.qValues method) (blacksheep.qValues method)

N

normalize() (in module blacksheep) (in module blacksheep.parsers)

O

OutlierTable (class in blacksheep) (class in blacksheep.classes)

P

plot_heatmap() (in module blacksheep) (in module blacksheep.visualization)

Q

qValues (class in blacksheep) (class in blacksheep.classes)

R

read_in_outliers() (in module blacksheep) (in module blacksheep.parsers)

read_in_values() (in module blacksheep) (in module blacksheep.parsers) run_simulations() (in module blacksheep)

S

subset_by_genes() (in module blacksheep.parsers)

W

write_gene_lists() (blacksheep.classes.qValues method) (blacksheep.qValues method)